PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS01815 BPHYT_RS01815 sugar ABC transporter permease (336 amino acids)

SeqID: BPHYT_RS01815 BPHYT_RS01815 sugar ABC transporter permease
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 400960: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS01815 BPHYT_RS01815 sugar ABC transporter permease
MHTEPRLGETAQQITAAPPASAATTVRKWRHLAMQREVIVLLAMVLFNLIFTPHFWSLQT
FNVNMTQVVTIVIVGIGMTLVVATGGIDLSVGASMAISGALAPMLFLNIAGPGGIALAFV
LPVLAAALCGVFNGLLVTRLSVQPIVATLVLFIAGRGIAQVVTDGSLQAFNTPAFQWIAL
GKVAGVPFQVLLMLALVGLFAWVVRKTLFGQYLLITGGNEKAAYLCGVPTATVKLIAYTL
CAALAGLAGLISISVNSSSDANVVGLGVELDAIAAVAVGGTALTGGKAYIGGTLIGALII
QLLRYTLLAHGIPDAAALVVKAGIIVAAVYVQRRSR