PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS03980 FitnessBrowser__BFirm:BPHYT_RS03980 (515 amino acids)

SeqID: BPHYT_RS03980 FitnessBrowser__BFirm:BPHYT_RS03980
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    4.90
    Periplasmic            2.50
    Extracellular          2.50
    OuterMembrane          0.10
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS03980 FitnessBrowser__BFirm:BPHYT_RS03980
MLTQGAVGAASVDTNGADAATAGTRCTRIAPVILAGGSGTRLWPVSRENYPKQLIDVVGS
DSLLQATARRMDGFPAGWSVDVSPIIVCGEEHRFVIAEQLHENGVDARLIVEPARRDTAP
ALTLAASLACADGGDAILVVMPADHSIADVPALQAALELAARYAEQGSIATLGVPPTRPD
TGFGYIRVGTELAGGGHAIDGFVEKPAEELAAKYVAAGMYWWNSGIFIVRASVWLDTLKR
LQPDMHSACERAFTGGRLDGAYFRPLVDAFLSAPANSIDYAVMERLTETAGSETPDKAPA
TPAGVVVGLNAGWSDLGSWDAVWAAMEKDANGNAGRGRVTFEGAVSSYAHSEGRLVACVG
TTNVVVVETADAVLVVDRSHVQDVKGLVSRIKAQHAPEADAHRKVRRPWGFYDSIDHGER
FQVKRIVVTPGAQLSLQLHHHRAEHWVVVRGTALVTRGEEQFLLSENESTYIPLGIKHRL
ENPGKVPLEIIEIQSGAYLGEDDIVRFNDNYGRCS