PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS04450 FitnessBrowser__BFirm:BPHYT_RS04450 (340 amino acids)

SeqID: BPHYT_RS04450 FitnessBrowser__BFirm:BPHYT_RS04450
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598533: ADP-L-glycero-D-mannoheptose 6-epimerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS04450 FitnessBrowser__BFirm:BPHYT_RS04450
MTTKGTILVTGGAGFIGSHTCVELLNGGYDVVVIDNLVNSNRESLRRVEKITGKAVTFYE
ADARDEAALNRIFDAHPITGAIHFAALKAVGESVAKPIEYYSNNVGSLLTLLGVMRDRNV
KQFVFSSSATVYGVPKSSPIDESFPLSATNPYGQSKLIAEQVLRDLELADPSWRIATLRY
FNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGGDYETPDGTGVRDYIHVV
DLARGHLAALDALVKRDASFVVNLGTGQGYSVIDVVKAFEKAAGRPVPYEIVARRPGDVA
SCFADPAAAEKIIGWRAQFGIERMCADHWRWQSTNPQGFA