PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS05360 FitnessBrowser__BFirm:BPHYT_RS05360 (439 amino acids)

SeqID: BPHYT_RS05360 FitnessBrowser__BFirm:BPHYT_RS05360
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 4033491: Inner membrane transport protein yfaV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS05360 FitnessBrowser__BFirm:BPHYT_RS05360
MASPANPLHHPGAGAPPSTFEEATYRKVSWRLAPLLMLCYVVAYLDRVNVGFAKLQMTSD
LGLSDAVYGFGAGIFFVGYFIFEIPSNVILHKVGARVWIARIMVSWGVISMLTMFVTTPT
MFYVMRFLLGLAEAGFFPGIILYLTYWYPAHRRGRMTTWFMTAIALSGVIGGPVSGYILK
TFNGMNGWHGWQWLFLLEGIPSVIVGIMVFTMLDDRISKAKWLTKEEQQLLERHVSAEEA
TKHDMPIRQVLTSGRVLMLSLTYFSFVMGLYGVSFWLPTIIKATGVTDAFMIGLLSAIPF
AGAVVAMVFVSRSADRKRERRWHIALPAFAGAVGLVLSVVWAHNTVLAMASLTLATMGIL
TTLPLFWSLPTAILAGTGAAAGIAMINSIGNLAGFLSPYAVGWLKQATAANDSGMYMLAA
FMVLGGLLAISVPAKMVNK