PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS05425 FitnessBrowser__BFirm:BPHYT_RS05425 (700 amino acids)

SeqID: BPHYT_RS05425 FitnessBrowser__BFirm:BPHYT_RS05425
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124028636: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS05425 FitnessBrowser__BFirm:BPHYT_RS05425
MSSSTVPSSPGWDLERSPFHEGELAVQERVGVREKIDAQGRRAVRRYLTAQQREFFLMLP
YVFMASVDSSGRPWASFLVGEPGFVNPTGDVTLTVRARALYGDPLNDTLVPGAEIALLGV
QFHTRRRNRVIGTVGALLPDGFTIDVRQTLGICPQYIQGRELSFNRDPLLPEPRPVHRNS
RLDASASAIISKADTYFVASVLLQEGDPVATGADVSHRGGRPGFVRIDDDHTLTAPDFVG
NFIFNTIGNWQFDNHAGLMFIDFDSGAMLYIAAHAEVLWDGPELHAFNGAQRLFRYHIDE
VCRVEASLPCTFTAPDYSPLLERTGHWDIVAKTLEAERLRTVWRPFKVLETIDESATIRS
FILEPADGSGLVGYQAGQYLPIRLQPPGWAEPTIRTYTLSDASNGRTYRISVKREGKGGC
SDFLHDHIVVGDTIETLAPRGAFVFDEAAGRPLALISAGVGITPLIAMLNSQLVNDGRTL
LHKPIYCIHSATNSKHRAFAAHLAKKGELHANLTLHVAFSRPSEDDVLGKTHQSEGYIDR
ALLRRVLPLDDYEVYLCGPPGFMQSVYDALLSLGVRDSRIHLESFGPASVSRRIERTVEV
DNSEGVVVTFAKSGRNAIWRPKVGSLLELAEANGLKPLYACRSGSCGTCVTRVVKGEVDY
TEPPAHDVEPGEALICIARPHPGPHLEDGTQNREGVTLDI