PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS06145 FitnessBrowser__BFirm:BPHYT_RS06145 (550 amino acids)

SeqID: BPHYT_RS06145 FitnessBrowser__BFirm:BPHYT_RS06145
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS06145 FitnessBrowser__BFirm:BPHYT_RS06145
MKASDLFVKSLEAEGVEYVFGIPGEENLDLLESLRRSKIRLILTRHEQAAGFMAATYGRL
TGRTGVCLATLGPGATNFVTAAAYAQLGGMPMLMVTGQKPIKSSKQGHFQIVDVVRMMEP
LTKYTRQIVSIANIPAMVREAVRQAEEERPGATHLELPEDVAHEEGDGKPIPKSFSRRPV
AEEKAVARAVEAITGAKHPLLMIGAGGNRKTTTKMLREFVDQIGIPFFTTQMGKGVIDES
HPMWLGNATLSDGDFVHRAIDHADCIINVGHDVIEKPPFFMRSGDAGEKTVIHVNFLGAE
VDTVYFPQIEVVGDIANAVWQLKESLKERQEHWDFTRFKEIKEHFEAHLAKGQHDDRFPM
YPVRVVNDVYETTPVDGIVCLDNGMYKIWFARYYRAHEPNSLLLDNALASMGAGLPSAIA
TKIVHPDRKVMAVCGDGGFMMNSQELETAVRLKLDLVILIVRDDAFGMIRWKQENMNFPD
YGMTLSNPDFVAYAESYGAKGHRIETAAEFAPLLRECFATPGVHVIDLPIDYSDNERVLN
REIKRLSAQL