PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS06770 FitnessBrowser__BFirm:BPHYT_RS06770 (390 amino acids)

SeqID: BPHYT_RS06770 FitnessBrowser__BFirm:BPHYT_RS06770
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598993: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS06770 FitnessBrowser__BFirm:BPHYT_RS06770
MNAPHDTPSSPTFPSRLPDVGTTIFTVMSALAAEKGAVNLGQGFPDFNCDPRIVDAVANA
MRDGHNQYPPMGGVAPLRQAISDKIESLYGRRYNATTEITVTAGATQALLTAILCTVHPG
DEVIVVEPTYDSYLPSIELAGGKPVFVTLDAPDYAIPFDKLAAAITPKTRLLLINTPHNP
TGTVWRADDMRKLEEIVRGTNVLILSDEVYEHMVYDGAPHESVARYPELAQRSFVVSSFG
KTYHVTGWKVGYVAAPAALTAEFRKVHQFNVFTVNTPMQIGLADYMKDPAPYLDLPAFYQ
KKRDFFRAGLANSRFKLLPCTGTYFQCVDYSAISDLPEAEFAQWLTGEIGVAAIPVSAFY
HEAHESGVVRFCFAKQESTLATALERLARL