PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS07010 FitnessBrowser__BFirm:BPHYT_RS07010 (672 amino acids)

SeqID: BPHYT_RS07010 FitnessBrowser__BFirm:BPHYT_RS07010
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 418555: Cation/acetate symporter actP]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS07010 FitnessBrowser__BFirm:BPHYT_RS07010
MKLTNRLISSYALYTLGFLLFIYVMWRIERTTGPGVWIGYVFLFVPIAVYAVIGLLSRTS
DLVEYYVAGRRVPSAFNGMATAADWLSAASFIGLAGSIYATGYDGLAYLMGWTGGYCLVA
FLLAPYVRKLARYTIPDFLGTRFSSNAVRGLAALAAVLCSFVYLVAQIQGVGLIATRFIG
VDFAVGIFCGLAGILVCSFLGGMRAVTWTQVAQYIILIAAILIPVSMIAHKDGLGWVPQF
NYGRLMERVEGLEKQVRDDPLEQTVRDDYRRRAALMQMRLDTLPQSFVDEKLRLTQEVAD
LRRHNGPLREIKERERSLEQFPRDAAAAQIVWAQRRDEMLMRAAAPVPMHEPFPAVSDED
RRIHERNFLSLLLCLSLGTASLPHILTRYNTTTSVASARRSVGWTLFFVALFYLTVPVLA
VLIKYEILTNLVGHHFSDLPQWLMQWRKVEPSLISLADTNGDGIVRWSEIQMQPDMVVLA
APEIAGLPYVMSGLIAAGALAAALSTADGLLLTIANALSHDVYYHMVDPNASSQRRVTIS
KILLLGVALFASYVASLNTGNILFLVGAAFSLAASSLFPVLVLGVFWKRTTRLGAVAGMV
AGLVVCIYYIVSTYPFFTQMTGFAGPRWFGIEPISSGVFGVPAGFLVAIGVSLIDRKPDA
YTRALVDYIRHP