PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS07235 BPHYT_RS07235 2-hydroxymuconic semialdehyde dehydrogenase (496 amino acids)

SeqID: BPHYT_RS07235 BPHYT_RS07235 2-hydroxymuconic semialdehyde dehydrogenase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595944: probable aldehyde dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS07235 BPHYT_RS07235 2-hydroxymuconic semialdehyde dehydrogenase
MTFTPAAAQRAQPLLRHYVDGEFIATATTFPNLSPVDGSVLAQVCEADAETVDAAVRAAA
AAQRAGWRNTTPAQRADWLHKIADGIQARFDEFVAAEVADTGRPLEQARKLDIARGIANF
RTFGDLIRTANSEFFETHAADGSELINYVTRKPLGVIGIISPWNLPLLLFTWKVAPALAM
GNCVVAKPSEETPGSATLLAEVMHDIGLPPGVFNLVHGHGPNAAGEFLTRHPDISAITFT
GESRTGSTIMKTVADGVKEISFELGGKNAAVVFADADFDAAVAGVLKSSFTNAGQVCLCS
ERVYVERSIFERFVAALKEKTEALRVGAPHDPETTMGPLISRGHREKVLSYFRLAVEEGA
TVVTGGHVPQFGDERDQGAFVMPTIWTGLADDARCVKEEIFGPVCHIAPFDTEDEVIGRV
NDSAYGLAASIWTTQLARGHRVARRIETGIVWVNAWFVRDLRTPFGGAKLSGIGREGGRH
SLDFYSELTNICVRIA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory