PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS07320 FitnessBrowser__BFirm:BPHYT_RS07320 (302 amino acids)

SeqID: BPHYT_RS07320 FitnessBrowser__BFirm:BPHYT_RS07320
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 67469239: N-acetylneuraminate lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS07320 FitnessBrowser__BFirm:BPHYT_RS07320
MFAPVITPFTKDLRIDAPRFVAFCRWLVGQGAGLALFGTNSEANSLGLTERHALLDDVIK
AGVDPAHLLPGTGSCALPDAIALTRHACEAGCAGALMLPPFFYKGVSDDGLFAYYSDVIQ
AIGSDQLRVLLYHIPQFTGVPITHTLIERLITAYPRTVVGIKDSSGDWANTEAMLRKFPG
FAVFPASEALLGKALPLGAAGCISATANIQPQAIASLLNATTLEERAVWEGKVATVRLAV
QAQPMIPALKHIVAHFANDESWTRVRPPLTPMNPAQSGALLQQLQALDFSMPAMATLATV
AA