PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS07715 FitnessBrowser__BFirm:BPHYT_RS07715 (446 amino acids)

SeqID: BPHYT_RS07715 FitnessBrowser__BFirm:BPHYT_RS07715
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596096: succinylarginine dihydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS07715 FitnessBrowser__BFirm:BPHYT_RS07715
MQATEANFDGLVGPTHNYAGLSFGNVASQNNEKSIANPKAAARQGLRKMKQLADLGFHQG
VLPPQERPSMRLLRELGFSGDDATVIARVAKDAPELLAAASSASAMWTANAATVSPSADT
HDGRVHFTPANLCSKLHRAIEHESTRRTLRAIFNDADRFVVHEALPGTPALGDEGAANHT
RFCADYAARGVEFFVYGRSEYRRGPEPKRFPARQTFEASRAVAHRHGLAEAATVYAQQNP
DVIDAGVFHNDVIAVGNRNTLFCHQLAFVEQNAVYDELRSKLTELKADFNVIEVPDAQVS
VADAVTSYLFNSQLLTRPDGKQVLVVPQECRENPRVAAYLDGLTSHAGPIDDVLVFDLRE
SMKNGGGPACLRLRVVLDDAERAAVTQGVWINDTLFGRLDTWIEKHYRDRLAPADLTDPQ
LLAESRTALDELTQILGLGSLYDFQR