PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS10100 BPHYT_RS10100 dihydroxy-acid dehydratase (620 amino acids)

SeqID: BPHYT_RS10100 BPHYT_RS10100 dihydroxy-acid dehydratase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS10100 BPHYT_RS10100 dihydroxy-acid dehydratase
MPDYRSKTSTHGRNMAGARALWRATGMKDGDFGKPIIAVVNSFTQFVPGHVHLRDLGALV
AKEIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCIS
NCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKVKSPTDGQVIAKIDLIDAMIKAGDSRVS
DAEVAEIERSACPTCGSCSGMFTANSMNCLTEAIGLALPGNGTIVATHAWRKGLFEQAGR
LVVDLCRRYYQEDDASVLPRSIASKQAFENAMALDVAMGGSTNTVLHLLAAAQEGGVDFT
MSDIDRISRKVPCLCKVAPATDKFHIEDVHRAGGIPGILGELARAELLDLSCGNVHSGTL
GNAIAKWDVAGGAGEEAQKFFRAAPGGIPTTVAFSQEATFAALDTDRNTGCIRSKQSAYS
KDGGLAVLYGNLAEKGCIVKTAGVDESQWIFSGRARVFESQDDAVEAILGDKVVAGDVVV
IRYEGPKGGPGMQEMLYPTSYLKSKGLGKSCALFTDGRFSGGSSGLVIGHASPEAAEGGT
IGLVEEGDVIEIDIPNRKMHLVVSDAELARRREAMEARGDKAWQPANRERVVSQALQAYA
ALATSADRGAVRDLSQLKRK