PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS10835 FitnessBrowser__BFirm:BPHYT_RS10835 (1012 amino acids)

SeqID: BPHYT_RS10835 FitnessBrowser__BFirm:BPHYT_RS10835
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS10835 FitnessBrowser__BFirm:BPHYT_RS10835
MNQRDLIHAGDTATHERDPELDKRPQRHLGRPMERLEDPAILTGHGRYGDDIGIRPGTLH
AAILRSPHAHAELVSIDTDAASKLPGVHAILTRDDLRAWSRPFVVGVKSPMEQWALAMDR
VRYVGEPVAVVLAQSRAIAEDGLDLLKVEYATLDPVTSIEQAASDESPVLHEKVGSNVIS
DRHFRYGEPEAAFEKAPHRVKLVAHYPRNTCAPIECGVVIAEYLAGDEGYDVTSNFMGPF
SLHAVMAMALNVPANRLRHKAPRDSGGSFGVKQAVFPYVVLMCLASRKAGAPVKWVEDRF
EHLSAATSATARLSTLEAAVESDGRITALSYDQLEDCGGYLRAPEPATFYRMHGCLTGAY
AIDNLLVRNRVVLTNKTPTGLVRGFGGPQVYFALERLMQRIALELKLDVLDVYRRNFVAA
DAFPYRAAAGALLDSGNYQEALRRALAEGGYDELRARRDAARKEGRLYGIGFAAIVEPSV
SNMGYITTVMPAEARKKAGPKSGAIASATVSVDLLGGVVVTIASTPAGQGHMTVCAQVVA
DVLGVSPHDVVVNVEFDTHKDAWSVAAGNYSSRFAGAVAGTVHLAAVRVRDKIARIVSKQ
MGCAPEDICFEEGRIFAKGAEDRAQPFGRVAANAPHWAPALLPEGEEPGLRETVFWNPPN
MAAPDENDRVNTSAAYGFAFDMCGVELDRATGRVRIDRYVTAHDAGTLLNPALADGQIRG
AFAQGLGAALMEEFRYGSDGSFQSGTLADYLMPTTCEVPDPVIVHLETPSPFTPLGAKGL
GEGNNMSTPPCIANAVADALGVDDIRLPLTPSKVMALIGIDDPEPSRPEFREAPAAKPAT
PGSGKALTAQGSVDLPASPEAIFAVLLDPNALAKVIPGCHALEAEATNQYRADVTVGVGM
IKARFEAKIGLSEIDAPHRLRLAGAGMSSLGSARGSGLVELTPIETGTRLSYDYEAQVSG
KVAAVGGRMLEGAAKVVLRQLFESLGRQAAGKPVHTGGSWLSRLLARFRRQA