PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS11215 FitnessBrowser__BFirm:BPHYT_RS11215 (532 amino acids)

SeqID: BPHYT_RS11215 FitnessBrowser__BFirm:BPHYT_RS11215
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404442: Ribose import ATP-binding protein rbsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS11215 FitnessBrowser__BFirm:BPHYT_RS11215
MDSTDHDAVPAVLSVSGIGKTYAEPVLADISLSLRAGEVLALTGENGAGKSTLSKIIGGL
VEPTAGTMQLGGVPYAPASRTQAEALGVRMVMQELNLLPTLSVAENLFLNRLPRAGAFSF
GWIDRRKLREDARQAMAQVGLDAIDPDTLVGELGIGHQQMVEIARNLIDDCRVLILDEPT
AMLTAREVDLLFEQIDRLKARGVALVYISHRLEELARVAEQIAVLRDGRLVHVDAMANLT
SDEIVTWMVGRELGERIDLGVRNIGAPLLKVDRLTRGKVVREVSFEVRAGEIFGISGLIG
AGRTELMRLIYGADPKDSGTVSLAATPGAPPTPVQIASPSDAVRAGIALITEDRKGEGLL
LPQPIAANVSLGNIGSVARHGIVDAKRENALAQTQIAAMRIRTSGPGQIVGELSGGNQQK
VVIGRWLARDCRVLLFDEPTRGIDVGAKFDIYGLMGALAREGRALVVVSSDLRELMLICD
RIGVMSAGSMTGVFERDNWSQDALLAAAFAGYRSREALLHAAPDTSEAGSAS