PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS11300 BPHYT_RS11300 2-dehydro-3-deoxygluconokinase (327 amino acids)

SeqID: BPHYT_RS11300 BPHYT_RS11300 2-dehydro-3-deoxygluconokinase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 132127: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS11300 BPHYT_RS11300 2-dehydro-3-deoxygluconokinase
MSKTTTSLDVITYGEAMAMFVAAETGPLAGVGQFTKRVAGADLNVAIGLSRLGFKVGWMS
RVGNDSFGQYVRDTLTKEGIDQGCVTTDERYPTGFQLKSKNDDGSDPAIEYFRKGSAASH
LSLADYAADYVLQARHLHLTGVAPAISASSRELAFHLAREMRAAGKTISFDPNLRPTLWP
SRAAMVEGLNALAALADWVLPGIGEGEILTGYTQPDDIAKFYLEQGARGVIIKLGAQGAY
FRTADDAAMIAGQPVAKVVDTVGAGDGFAVGVVSALLEGKSLPQAVARGNRIGALAIQVI
GDSEGLPSRAELDALEAAQAPSVAAAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory