PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS11450 FitnessBrowser__BFirm:BPHYT_RS11450 (366 amino acids)

SeqID: BPHYT_RS11450 FitnessBrowser__BFirm:BPHYT_RS11450
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2507606: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS11450 FitnessBrowser__BFirm:BPHYT_RS11450
MKRRVVGQVAALVLCAAPWLTAAAKDTQLNVYNWSDYIAKDTIPNFTKQTGVQVKYDNYD
SDDTLQAKLLTGNSGYDIVVPTSNYAGKQIAAGIFAPLDKSKLPNLKYLDPSLMALVAGA
DPGNKFTVPWAYGTTGLGYNVTKAQQILGKNVPLDSWDVLFKPENISKLKACGVSVLDAP
DQMFAAALHYIGKDPMSTNPADYRAALDMMKKIRPYITQFNSSGYINDLVGGDVCFAYGW
SGDVVIAKHRAVEAKKPYKVEYYIPKGGAPVWFDVMAIPKDAKNKEAALEWINYIETPQV
HAAITNAVYYPSANLEARKYVDKDVANDPAVYPPPEVIKTLFLLKPLPPEIQRLQTRLWT
EFKSGR