PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS12315 FitnessBrowser__BFirm:BPHYT_RS12315 (164 amino acids)

SeqID: BPHYT_RS12315 FitnessBrowser__BFirm:BPHYT_RS12315
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596969: probable methyltransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS12315 FitnessBrowser__BFirm:BPHYT_RS12315
MSFATADLCDAHEDQLALGTLRVLEPVFHLFSRAECFSGEAVTLKVFEDNALVRATLEEK
GAGRVLVIDGGGSLRCALVGGNLAQLAEQNGWAGIVLNGCVRDALELNEVNVGIAALTTS
PRRGQKLGTGERDVAVHLPGALVRPGEWVYADIDGVLVASAALN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory