PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS12370 FitnessBrowser__BFirm:BPHYT_RS12370 (544 amino acids)

SeqID: BPHYT_RS12370 FitnessBrowser__BFirm:BPHYT_RS12370
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS12370 FitnessBrowser__BFirm:BPHYT_RS12370
MSANLQNTASRTTPPPLLELDHLHVRFGDTVAVSDVTLAIQRGERVALVGESGSGKSVTA
LSILRLLSDAQVSGSIRFDGEDLLGKTEREMRGMRGSDIAMIFQEPMTALNPLYTVGDQI
AETIVVHDGVSANEARKRAVALLGRTGIAEPGKRVNSYPHQLSGGQRQRAMIAMALACRP
RLLLADEPTTALDVTIRAQIVDLLLELQRDEAEKRGMAVLLITHDLNLVRHFAQRIAVME
KGVLVESGPVEQVFESPQHPYTQRLLASRPQRTVVPVLPISPVLLEAREISVDFKTKLPG
FSGWFRSGRFRAVADANVSVRQGETLGIVGESGSGKSTLAMALLGLQRTVHGEIEFQGRA
LGSYRGAEQTALRSNMQVVFQDPFSSLSPRQTIERIVGEGLALHRPAMTPQARRDKVISV
LREVGLDRTVLQRYPHEFSGGQRQRIAIARALVLEPRILILDEPTSALDVSIQQQVLKLL
AGLQQKYNLGFVFISHDLAVIGAMAHRVAVMQNGSIVESGEVEEIFSTPAHPYTRKLLKA
ALDH