PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS13365 FitnessBrowser__BFirm:BPHYT_RS13365 (530 amino acids)

SeqID: BPHYT_RS13365 FitnessBrowser__BFirm:BPHYT_RS13365
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            6.00
    Cytoplasmic            4.00
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS13365 FitnessBrowser__BFirm:BPHYT_RS13365
MEALLEKAANQPAATAEAPPALFNFAAYLFRLNETRATKTAYIDDTGSITYGELEERARR
FASALRTLGVHPEERVLLVMLDTIALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSH
ARAVIASGALVQNVTQALDSSEHDGCQLIVSQPCEGEPLLAPLLEELIDAAAPAAKAAAT
GCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAESDVVFSAAKLFFAYGL
GNGLTFPLSVGATAILMAERPTADAIFMRLVKHRPTVFYGVPTLYANMLVSPNLPARADV
AMRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG
YEVELRDDAGHAVADGEVGDLYIKGPSAAVMYWNNREKTRATFLGEWIRSGDKYCRLANG
CYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHGAVLEAAVVGVDHGGLVKTRAFVVLKREF
AASEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory