PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS13880 FitnessBrowser__BFirm:BPHYT_RS13880 (349 amino acids)

SeqID: BPHYT_RS13880 FitnessBrowser__BFirm:BPHYT_RS13880
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2498407: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            5.41
    Periplasmic            4.48
    CytoplasmicMembrane    0.06
    Extracellular          0.05
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS13880 FitnessBrowser__BFirm:BPHYT_RS13880
MTAAAPRVRVGVVGLGRLGKRHAENLAYRVPGASLVAACSPVEEERAWAREALPAPRLYE
DYAELLGDREVDAVWLVTPSSLHAQQIVDALRAGKHVFCEKPLSLDLAECERVLAESARY
PHLQATIGFMRRFDPSYRDAFEKIEAGKIGRPFLVRSQTADQNDSDGFFVRFAATSGGIF
LDCTVHDIDVARWLLGKPRAKRVFAAGAAVMHEGLREFGDVDNGVAICEFEGGKLAMFYA
SRTQAHGNDTHSEVIGTAGALAIGRNPRANRVEIYDATGIRNECTPNFFDRFEDAFLFEA
RAFVAAVRGGVGASAAQAGAGASLADAVEATRIGVALRESLLRGEAVTL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory