PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS13925 FitnessBrowser__BFirm:BPHYT_RS13925 (266 amino acids)

SeqID: BPHYT_RS13925 FitnessBrowser__BFirm:BPHYT_RS13925
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS13925 FitnessBrowser__BFirm:BPHYT_RS13925
MSLLVKAQREGQTIARVTPESACWRYVGFAAYRLGENEVVHVFEPSRETCIVVLTGAVDI
ETADTKWSSLGSRDSVFEDAAPYAVYLPPNVRITVRACRDAEIGVASAPAKGELPARLIE
PGSMKRSTRGKGLNTRYVCDILPQTEPAESLLVVEVRTPGGHASSYPPHKHDTDNVPHES
SLEETYYHRLDPPQGFAFQRVYTDMRDIDESMAVENHDVVMVPRGYHPVIVPYGYDSYYL
NVMAGGQRVWHFRNDPAHEWIINKDA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory