PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS14190 FitnessBrowser__BFirm:BPHYT_RS14190 (1084 amino acids)

SeqID: BPHYT_RS14190 FitnessBrowser__BFirm:BPHYT_RS14190
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599950: carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS14190 FitnessBrowser__BFirm:BPHYT_RS14190
MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPNT
ADVTYIEPITWEVVERIIAKERPDAILPTMGGQTALNCALDLHAHGVLEKYKVELIGASP
EAIDKAEDRQKFKDAMTKIGLGSAKSGTAHSMEEALAVQADIASQTGSGGYPVVIRPSFT
LGGSGGGIAYNRDEFEEICKRGLDLSPTRELLIEESLLGWKEYEMEVVRDKKDNCIIVCS
IENLDPMGIHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVDTGGSNVQFSINPKDG
RMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYSLDELKNEITGGQTPASFEPTID
YVVTKIPRFAFEKFREADSRLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGLDEKT
DNRDEIIREIGEAGPDRIWYVGDAFRVGMTAEEIFEETSIDPWFLAQIEQIILKEKALAG
RTLASLSKEELKYLKQSGFSDRRLAKLLGAKPAEVRQRRIELNVRPVYKRVDTCAAEFAT
KTAYMYSTYEEECEANPTSNKKIMVLGGGPNRIGQGIEFDYCCVHAALAMREDGYETIMV
NCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALDLEANGV
PIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADEIGYPLVVRPSYV
LGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGEAVFIGGVM
EHIEQAGVHSGDSACSLPPYSLSKETVAELKRQTGAMAKALNVIGLMNVQFAIQQVPQAD
GSKEDVIYVLEVNPRASRTVPYVSKATSLPLAKIAARAMVGQKLADQGVTKEIDPPYFSV
KEAVFPFVKFPAVDPVLGPEMRSTGEVMGVGQTFGEALFKSQLAAGSRLPESGTVLLTVM
DADKPKAVEVARMLHELGYPIVATKGTAAAIEAAGVPVKVVNKVKDGRPHIVDMIKNGEI
ALVFTTVDETRAAIADSRSIRMSAQANKVTYYTTMSGARAAVEGLRYLKDLEVYDLQGLH
ARLN