PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS14615 FitnessBrowser__BFirm:BPHYT_RS14615 (466 amino acids)

SeqID: BPHYT_RS14615 FitnessBrowser__BFirm:BPHYT_RS14615
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 120601: Fumarate hydratase class II]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS14615 FitnessBrowser__BFirm:BPHYT_RS14615
MTEDVRMERDTFGEIAVPNARLWGAQTQRSLQNFRISTEKQSPELIVALAVIKRAAAEVN
LGLGVLDESKAKAIMQAADEIIDGKHPDEFPLAVWQTGSGTQTNMNLNEVIANRASELLG
GVRGEERKVHPNDDVNRGQSSNDVFPTAMHVAAAYAIVKHLQPALKTLRDTLDGKAKAFA
DIVKIGRTHLQDATPLTLGQEFSGYVAQLDHGIRHVETALPHLYELAQGGTAVGTGLNAH
PQFADKVAAAIGKLTGLPFVSAPNKFEVMAAADALVFAHGALKTVAASLNKIANDVRWLA
SGPRCGLGELSIPENEPGSSIMPGKVNPTQSEALTMLCAQVFGNDVAVNIGGASGNFELN
VFRPMIAHNVLQSVRLLADGARSFNDNCAVGIEPNRERIETLLNESLMLVTALNPHIGYD
KAAKIAKKAHKEGTTLKAAALALGFVTEQQFDEWVRPKDMVGNSAS