PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS14790 FitnessBrowser__BFirm:BPHYT_RS14790 (428 amino acids)

SeqID: BPHYT_RS14790 FitnessBrowser__BFirm:BPHYT_RS14790
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 62288063: D-amino acid dehydrogenase small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS14790 FitnessBrowser__BFirm:BPHYT_RS14790
MRVVVLGSGVVGVTSAYYLARAGHEVTVIDREAGPALETSFANAGQISPGYASPWAAPGV
PLKAVKWMFQKHAPLAIRLDGTQFQLQWMWQMLQNCTSSRYAVNKGRMVRLAEYSRDCLQ
ALRAETGIQYEGRTGGTLQVFRTQQQFDGAAKDIAVLQEANVPYELLSPAELARAEPALA
AVSHKLTGGLRLPGDETGDCQMFTTRLAALAEELGVKFRYNTPIDALAMAGDRIAGVKCG
EELVRADSFVVALGSYSTQFLSGLVKIPVYPLKGYSITAPIVNEASAPVSTVLDETYKIA
ITRFDDRIRVGGMAEIVGFDKSLRQARRETLELCVNDLFPGGGDTSKATFWTGLRPMTPD
GTPIVGRTPVPNLFLNTGHGTLGWTMSCGSGQLLADVMSGKQPAIKADDLSVHRYLGEVG
GAHRPAYA