PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS15070 FitnessBrowser__BFirm:BPHYT_RS15070 (459 amino acids)

SeqID: BPHYT_RS15070 FitnessBrowser__BFirm:BPHYT_RS15070
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS15070 FitnessBrowser__BFirm:BPHYT_RS15070
MATELTPFPPLAQLAADLAAGRTTSRALVETALERIADPAGQGAAVFMHVDADSARSAAD
AHDRLRAAGTVLSPLAGIPVSVKDLFDIEGQPTRAGSTVLADAPAAKADAVAVARLKRAG
AVLVGRTNMSEFAFSGLGLNPHYGNPLSPYQRGVKGDERISGGSSSGAAASVADGMAAIA
LGTDTGGSIRIPAALCGLTGFKPTADRIPKQGGVPLSSTLDSFGPIGVSVACCALVDRML
AGLEPRIPAARPLEGVRLGVLTNFVTDGVEPAVAAAIDTALKHLEAAGAIVSEVRFAPLD
RLPEINRFGFSPIEAYAWHRPLLEKHRDQYDPRVLVRILKGQPASAADYLDLLAEREAML
AEAARTLWQRFDAVVAPTVPVVPPRVADLVDDDEAFGRTNALILRNPSVFNFLDTCALSL
PCHLRGDAPVGLMLAGAPHADDALLAIGRGAEAVLKAIR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory