PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS15540 FitnessBrowser__BFirm:BPHYT_RS15540 (640 amino acids)

SeqID: BPHYT_RS15540 FitnessBrowser__BFirm:BPHYT_RS15540
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168476: Oligopeptide transport ATP-binding protein appF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS15540 FitnessBrowser__BFirm:BPHYT_RS15540
MPTSSHTARPLIETLPPQRVLAVDDLSVAFRSGDTTFNAVRNLSLTVERGETLAIVGESG
SGKSVTSLALMRLIEHGGGRLAGGSIAFRRRDGSVLDLAKASSGTMRSIRGADIAMIFQE
PMTSLNPVFTVGDQISEAIALHQGKSRSAAHAETLRLLELVRIPEARRVAARFPHQLSGG
MRQRVMIAMALSCKPALLIADEPTTALDVTIQAQILQLIRGLQDEMNMGVIFITHDMGVV
AEVADRVLVMYRGEKVEEGASDALFAAPSHPYTKALLAAVPRLGAMQGTDQPAKFPILTV
EQASLSGTYQAVRPAAAVAEETQPLVQETTPPILRVRDLVTRFPVKSGLFGRLTGRVHAV
EKVSFDLRPGETLALVGESGCGKSTTGRSLLRLVESQSGSIEFNGKEISSLTGPALQALR
RDIQFIFQDPFASLNPRLTVGFSIMEPLLVHGVAQGAEAQARVQWLLDKVGLPSEAARRY
PHEFSGGQRQRIAIARALALNPKVVIADESVSALDVSVQAQIVNLMLDLQRELGVAYLFI
SHDMAVVERVSHRVAVMYLGQIVEIGPRRAVFEAPQHPYTRKLMGAVPVADPARRHAKRM
LAADEIPSPIRALNDEPIVAPLVAVGPDHFVAQHHVGGAY