PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS15610 BPHYT_RS15610 branched-chain amino acid ABC transporter substrate-binding protein (399 amino acids)

SeqID: BPHYT_RS15610 BPHYT_RS15610 branched-chain amino acid ABC transporter substrate-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 12230875: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS15610 BPHYT_RS15610 branched-chain amino acid ABC transporter substrate-binding protein
MRVRFAYAVSIAAAVAMLTACGKKQDGEAGAGASAATVAAAPASEATVVKIGHAAPLTGP
IAHLGKDNENGARLAIDEINTQGLTIDGHKIQLELDAQDDAADPKTGTAVAEKFVDDHVV
AVVGHLNSGVSIPASKIYSDAGILEISPSSTNPGYTQQGFKTTYRVVATDAQQGPALANY
ATKVLNAKRIAIVDDSSVYGKGLADEFAKTVQASGAKIVARESTNDRATEFQAVLRKIKR
VQPDVIMFGGMDATGGPFTKQAAALGIRAKILGGDGVCTDKVGELAGTAVQNLVCSEAGL
ALSKMDKGADFEKKYVDRFHTPVQIYAPFTYDAVYVIVDAMKRANSIEAPKVLAAMPSTD
YNGVIGHIAFDDKGDLKEGAITLYDFKDGKKAVLDVVKM