PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS15780 FitnessBrowser__BFirm:BPHYT_RS15780 (727 amino acids)

SeqID: BPHYT_RS15780 FitnessBrowser__BFirm:BPHYT_RS15780
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00221: MIP Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS15780 FitnessBrowser__BFirm:BPHYT_RS15780
MNGPPPSSFPAFDVSKSDRTDALTVVGLTVTYRIRGRDREVLQDISFRVRRGEAYGLVGE
SGCGKSTVAMAALRYLPRNGKVKAGKIIIAGEDVQKLNADALRNMRANAISMVYQDPGRA
LNPSLTIARQVSEAFEAAGVARDEALRRTLEMLQRVRIAAPERVMESYPHQLSGGMQQRV
VIAMALASNPALLILDEPTTGLDATVEAEVLDLVAQLRKELGTAVLFISHNLAVIGRMCE
RVGVLYAGKLVEEGATQDVFTRPRHPYTVGLLRCLPTTGRSKDSERLDTIAGSLPSPGSV
TQGCIYADRCRLADDRCRREAPPPYRVSAARGDQMSRCHYHERAIDLPRASAEALPERSD
APVDGKPPALVLRAERLSKTFHVSGAALRAVDNVSIDLASGETLGLVGESGSGKTTLAKL
MLGLLTPDAGSVLELDGAPLAARVTRRNTEQVKSLQIVFQNPDSALNRAHSVKRLIGRAL
SRLTALRGPAIDERLAALTDAVRLPQRYLGSRTRQLSGGLKQRVAIARAFAGEPRVVVCD
EPTSALDVSVQAAILNLLADLQRERGVSYVFISHDLHVVRYLADRIAVLYLGRLLEIGPA
AAVFEGPHHPYTEALLSSVPTLDGQGGATRIHLSGDLPSAASPPSGCVFHTRCPRKLGAI
CEQQDPPFVDAGEGEAAMPSAHRIRCHIPVDELRALQTASRGDAGQVAGKVLGDGSENAP
ENAGRDE