PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS16495 FitnessBrowser__BFirm:BPHYT_RS16495 (499 amino acids)

SeqID: BPHYT_RS16495 FitnessBrowser__BFirm:BPHYT_RS16495
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS16495 FitnessBrowser__BFirm:BPHYT_RS16495
MQDQYILALDQGTTSSRAMLFDRLGNIVSTAQKEFQQIYPRPGWVEHDPQEIWSTQAGVA
AEAVTRAGMNGTSIAAIGITNQRETTIVWDRETGHPIYNAIVWQDRRTADFCDQLKEQGL
EEKVRAKTGLPIDSYFSATKIRWILDNVEGAREKARQGRLAFGTVDSWLVWNFTKGGLHV
TDVTNASRTMLFNIHSLKWDDELLEALDIPRSMLPEVRASSEVYGPTKTTVFASKIPLAG
IAGDQHAALFGQMCTESGMVKNTYGTGCFLVMNTGDKPIESKNNLVTTIAWQIGDQINYA
LEGSIFIGGAVVQWLRDGLGIIKNAAEIETLARSVSHSDGVYLVPAFAGLGAPHWNARAR
GTLFGVTRGTSSAHIARAALDSIAYQSLDVLKAMEADSGIRIGELRVDGGACANNLLMQF
QADILGVDAVRPKVAETTALGAAYLAGLAVGYWKDVDELQSQWKLDRRFTPALPHAEVKQ
CLDGWQRAIRAAKAWADTP