PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS17360 FitnessBrowser__BFirm:BPHYT_RS17360 (434 amino acids)

SeqID: BPHYT_RS17360 FitnessBrowser__BFirm:BPHYT_RS17360
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS17360 FitnessBrowser__BFirm:BPHYT_RS17360
MTTALPLDPIETASRDELAALQLERLKWSLNHAYENSPVYRHKFDEAGVHPSEVKTLADL
ARFPFTTKKDLRDSYPFGMFAVPQEQISRIHASSGTTGKPTVVGYTARDIDTWANLVARS
VRAAGAKRGDKVHISYGYGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDI
IMVTPSYMLSIADELERQGVDPANCSLRIGIFGAEPWTNDMRQAIEKRMGIDAVDIYGLS
EVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEALPIVR
YRTRDLTRLLPGSARTMRRMEKITGRSDDMMIVRGVNVFPTQIEELLLKQRALAPHYQIV
LTKEGPLDVLTLNVEPCPESAPDTAALSTAKQALAYDIKALIGVSAVVNVLAVNGIERSV
GKARRVVDKRKLGL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory