PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS18305 FitnessBrowser__BFirm:BPHYT_RS18305 (1199 amino acids)

SeqID: BPHYT_RS18305 FitnessBrowser__BFirm:BPHYT_RS18305
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS18305 FitnessBrowser__BFirm:BPHYT_RS18305
MNAPLDAGQRASLEAALSSVTLDDKYTLERGRAYMSGIQALVRLPMLQQERDRAAGLNTA
GFISGYRGSPLGGLDQSLWKAKQHLAAHQVVFQPGVNEDLAATAVWGSQQVNLYPSAKYD
GVFSMWYGKGPGVDRSSDVFKHGNSAGSARNGGVLVLAGDDHAAKSSTLAHQSEHIFKAC
GLPVLFPSNVQEYLDFGLHGWAMSRYSGLWVAMKCVTDVVESSASVDIDPHRTKIILPED
FAMPEGGLNIRWPDPPLVQEARLLDYKWYAALAYVRANKLDRVEIDSPHARFGIMTGGKA
YLDVRQALTDLGLDDETCSRIGIRLYKVGCVWPLEAQGAQAFARGLDEILVVEEKRQILE
YAIKEELYNWPDAQRPRVFGKFDEKDGAGGEWSVPMGNWLLPAHYELSPAIIAKAIATRL
DKFDLPSDVRARIATRIAVIEAKEKALARPRVEAERKPWFCSGCPHNTSTNVPEGSRAMA
GIGCHYMTVWMDRSTSTFSQMGGEGVAWIGQAPFSNDKHVFANLGDGTYFHSGLLAIRAA
IASKANITYKILYNDAVAMTGGQPVDGVLTVPQITHQLAAEGATKIVIVTDEPEKYSANV
GLAPGIDIHHRDKLDEVQRQLREVPGTTILIYDQTCATEKRRRRKRGTYPDPARRVVINE
AVCEGCGDCSVKSNCLSVEPLDTEYGTKRQINQSTCNKDFSCVNGFCPSFVSVEGGQLRK
PKAASGLAGDAMPPVPEPDLPSMERPYGVLVTGVGGTGVVTIGALLGMAAHLENKGVTVL
DVTGLAQKGGAVMSHVQIAKNPADIHATRIAMGEASLVIGCDAIVTASDECVSRMQAGRT
RVVLNSAHTPTAELIKNPNWRFPGSSTEADVRAAAGDDGVDTVDANHFAVALLGDAIYTN
PFVLGYAWQRGWVPLTYQSLMRAIELNNVQVEKNRAAFEWGRRAAHDLAGVRKLAQSQGR
GAAAETASSKIISLHTPKALDTLIDKRAEYLTAWQNSAYADRYRALVSQVRAAESALDSI
DGQLPLTEAVAKNLHKLMAYKDEYEVARLYSDPAFIEKLKANFEGDWKLHIHLAPPTFSK
KDAKGHLVKKKYGPWVFSAMHVLARLKFLRGTALDVFGKTEERRTERALIGEYEALVREL
IAGLTAQKRELAVELANLPDGIRGYGHVKENNLKGVRVKWNELLARWRSPEAGKTQHAA