PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS18565 FitnessBrowser__BFirm:BPHYT_RS18565 (453 amino acids)

SeqID: BPHYT_RS18565 FitnessBrowser__BFirm:BPHYT_RS18565
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506338: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS18565 FitnessBrowser__BFirm:BPHYT_RS18565
MNIVILAAGTGKRMRSALPKVLHPLAGQPLLAHVIDTARTLKPTHLVVVVGHGAEAVRKA
VAAPDVQFAVQEQQLGTGHAVQQALPLLDPSAPTLVLYGDVPLTRAGTLQALTERAGQGG
YGVLTVTLADPSGYGRIVRDAQGKVARIVEQKDATPEQLEIAEINTGIIVAPTERLGRWL
AALKNDNAQGEFYLTDAVEMAIEAGLEVVTTQPEDEWETLGVNSKQQLAELERIHQHNVA
DALLVAGVTLADPARLDVRGTLECGRDVSIDVNCVFEGRVTLADNVTIGPNCVIRDANIG
AGTRVDAFTHIEGAEVGANAVLGPYARLRPGASLHDESHVGNFVEVKNAVLGRGSKANHL
TYIGDSDIGARVNIGAGTITCNYDGANKFRTIIEDDVFVGSDTQLVAPVRVKRGATIAAG
TTVWKDVEADALVLNDKTQTSKTGYVRPTKKKS