PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS18670 FitnessBrowser__BFirm:BPHYT_RS18670 (339 amino acids)

SeqID: BPHYT_RS18670 FitnessBrowser__BFirm:BPHYT_RS18670
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168476: Oligopeptide transport ATP-binding protein appF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS18670 FitnessBrowser__BFirm:BPHYT_RS18670
MNAVLETRRQSDHAGDHVLVAEQLARYYTVKRGMFASGTVKALNGVSFALERGKTLAVVG
ESGCGKSTLARQLTMIEAPSAGRLLIDGEDVAGADHAKIAALRRRVQMVFQNPFASLNPR
KTVEQTLGEPLAINTQLSATERAERIAQMMRTVGLRPEHAKRYPHMFSGGQRQRVAIARA
MILDPQIVVADEPVSALDVSIQAQILNLFMDLQEQFKTSYVFISHNLSVVEHIADDVMVM
YFGGVAELGDKKRIFSNPRHPYTRALMSATPSIFEADRTIKIKLQGEMPSPLNPPSGCTF
HQRCPYVIDRCRSEEPKLREVDGRQVSCHRAEEVGDVDA