PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS18735 FitnessBrowser__BFirm:BPHYT_RS18735 (552 amino acids)

SeqID: BPHYT_RS18735 FitnessBrowser__BFirm:BPHYT_RS18735
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS18735 FitnessBrowser__BFirm:BPHYT_RS18735
MQYDYIIVGAGSGGCALASRLADSCPDATIALIEAGPHTDRNLFVNMPVGVAAVVPHKLK
TNYGYLTTPQPGLGGRQGYQPRGRGFGGSSAINAMIYTRGHPLDYDEWAELGCEGWSWTE
VLPYFRRTEGNQRGADAWHGDSGPLTVSDLRYQNPFSRRFVQAAIEAGYKPNSDFNGADQ
EGIGFYQVTQRDGRRCSVARAYIYDRARPNLHTIADATVLRVAFNGKRASGVEIVRGGRT
ETLEARAEVVLAAGAFNSPQLLMCSGIGPAAHLQSLGIAVLHDAPEVGQNLIDHVDFTIN
KRVSSIEPTGFSIRGIARMLPQFVTFMRHGRGMLSSNVAEAGGFLKSKPTLDRPDLQLHF
CAAIVDDHNRHMHWGHGYSLHVCVLRPHSRGTVTLASADARTAPVIDPRFFSDPRDLDLL
VDGARMARRILDAPSLALHGGSELYTHSGQSDAELRRTIVEHADTIYHPVATCRMGGDAR
SVVDPQLRVRGVTGLRIVDASVMPTLIGGNTNSPTVMIGERAADLIAAARRASQTELKIA
STSRAGMAADTA