PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS19375 FitnessBrowser__BFirm:BPHYT_RS19375 (576 amino acids)

SeqID: BPHYT_RS19375 FitnessBrowser__BFirm:BPHYT_RS19375
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS19375 FitnessBrowser__BFirm:BPHYT_RS19375
MATHASGEGALIEPKDGLSYVRGSTDIPLSEATVGRFLRDTAASFPDRPAVVFREQLIRW
TWKEFAEEVDILAAGLLTLGIAKGDRVGIWSPNRVEWLLTQFATARIGAVLVNINPAYRL
AELEYALNKVGCKAIIAAERFKTSMYLEMLQALAPELATQAPGELHAARLPELRYVIRMC
DTETPGMLTFSDVIERGRVCLDVAKLDAIGATLSCHEPINIQFTSGTTGNPKGATLTHSN
VVNNARYIAMAMRLSEQDGLCIPVPLYHCFGMVLAVLACVSVGAKMVFPGEGFDPAATLA
AVAEEQCTALHGVPTMFIAELDHPNFATYDFSRLRTGIMAGSPCPIETMKKVVSRMHLSE
ITIAYGMTETSPVSFQSSTTDPLDKRTTTVGRIQPHLEVKIVDPLGAIVPVGETGELCTR
GYSVMQGYWGDEAKTRESIVDGWMHTGDLATLDAEGYCNIVGRLKDMLIRGGENIYPREI
EEFLFRHPKIQSVQVFGVPDTKYGEEVCAWVVLRSGEQVTAEEIQQFCHGQIAHYKVPKY
IRFVDELPMTVTGKVQKFIMREQMISELKLREDKTA