PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS20560 FitnessBrowser__BFirm:BPHYT_RS20560 (316 amino acids)

SeqID: BPHYT_RS20560 FitnessBrowser__BFirm:BPHYT_RS20560
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597142: binding protein component precursor of ABC ribose transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS20560 FitnessBrowser__BFirm:BPHYT_RS20560
MRRRVVIAGALAAAGIGGAADAAATPGGKLKIALVLKSLGDPFTIAMASAAQNYQQHYAS
QFDLTVRGTATESDTTGQIRMVEEMIKAKMNAIVIAPTDSKALTAVVARAIKAGVIVVSI
DNPLDEAFQDAAGISVPFVGPNNRKGAQQVSNYLAERLKTGDQVGVIEGSSADRNAQQRT
DGCRDAMNAAGINIVAVQTGDWEYGKGRDAASKMLSEHPQIRGLMCGNDNMAMGAVDAVR
DAGRTGGVYVTGYNDIDAIKPLIADGRVLATVNQFAARQAVFGVDVALKAVTEQRKQSEL
SSVIETPLQLVTAANH