PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS20800 FitnessBrowser__BFirm:BPHYT_RS20800 (557 amino acids)

SeqID: BPHYT_RS20800 FitnessBrowser__BFirm:BPHYT_RS20800
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS20800 FitnessBrowser__BFirm:BPHYT_RS20800
MYDYVIVGGGAAGCALAARLTEDAGNRVLLLEAGPADTDPYIHMPVGFFKMTGGPLTWGY
RTTAAEHTQRRQIPFAQGRVLGGGGSINAMVYTRGQPADYDGWERDGCTGWGFRDGVLPY
LRRMEDNERLCNEYHGVGGPLGVSDLISVNELTKAFVLAGQEAGMPYNSDFNGAQQEGVG
VYQVTQRSGKRCSAAVGYLRDARSRPNLTVRTDCLVSRIVIEKGRAVGVEFAPRGERANV
TIARAEREVIVTAGAIGSPKLLMLSGIGRAEDLERVGVKPVHALNGVGQNLQDHFDIDIV
YELNGPYSLDKYAKKHMMLLAGLEYKLFNKGPVTSNIAEGGAFWYSDSSVPTPDLQFHFL
PGAGVEAGVPPVPSGSGCTLNSYFLRPRSRGSVTLHSADPADAPLIDPAYIRDPYDLKVA
VDGIRQSREIMSQHALRKYIRSEHFPGGLVRTQAEYETYAQQYGRTGYHPVGTCKMGVDE
MSVVDPQLRVRGIEGLRVADSSVMPRIVSSNTNAPTLMIAEKAADLIRGLAAQPAAVKGA
LASTSGRVARESAAAAV