PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS21270 BPHYT_RS21270 dihydroxy-acid dehydratase (586 amino acids)

SeqID: BPHYT_RS21270 BPHYT_RS21270 dihydroxy-acid dehydratase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS21270 BPHYT_RS21270 dihydroxy-acid dehydratase
MTKRKKPEELRSHRWYGVNDLRSFGHRSRTAQMGYDREEYAGKPVIAILNTWSEINACHT
HFKQRVEEVKRGIWQAGGFPVELPVQTLSEPFQKPTTMLYRNFLAMEAEETLRSYPADGV
VLMGGCDKTTPGLLMGAISMDLPAIFLPAGPMLRGNWNGVTLGSGSDVWKYWAELRAGTI
TQDDWQGIEGGIARSPGHCMTMGTASTMTSAAEALGFTLPGFASIPAADSRHAQMAAKTG
KRIVEMVWEDLKPSDLITAGSVDNAVTTCLALSGSTNAIVHMIALARRAGIELTLDRYDD
IARRTPVLANVRPTGAYLMEDFFYAGGLRALLAELGELIDRSQKTVNGRTLGENLEGAEI
FNDDVIRRRDKPLLPNSGLAVLRGNIAPDGAVIKPGAAEPHLLVHTGRAVVFKDYNDMAA
RIDDDTLDIDENSLIVLQHAGPVGAPGMPEWGQLPIPRKLLQKGVRDMVRISDARMSGTS
YGACVLHVAPESFIGGPFALVESGDMIELDVPRRKLNLLVTDDELARRKAAWVRPAPRFT
RGYGAMHQVHVMQANQGCDFDFLQRGGAQAAPDADVAKDTGEPEIH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory