PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS21490 FitnessBrowser__BFirm:BPHYT_RS21490 (646 amino acids)

SeqID: BPHYT_RS21490 FitnessBrowser__BFirm:BPHYT_RS21490
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [18 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 585411: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS21490 FitnessBrowser__BFirm:BPHYT_RS21490
MLSNLLVQLVNGLADASTLFLVAAGLSLIFGVTRIVNFAHGSFYMFGIYVAYSIASRFGH
TTGGFWLSVLAAALVVAVLGALVEMVVLRRIYQAPELFHLLATFALVLIFRDAALWLWGP
EDLFGPRAPHLAGAVDFLGHPLPTYDIALIVIGPVVLLLLWYALTRTRWGTLVRAATQDR
EMLGALGINQAWLFTGVFFVGAFLAGLGGALQGPRMSANLSLDLETIGNAFVVVVVGGMG
SIPGAFIAALIIAEIKALCIGIGHVTIFGVGLSLSRFTLVAEFVVMAVVLVVRPWGLLGR
ASAAVRGMAAPETPLRPAGKRLKWLAAIALLVLVLAPLAANAFPYMPVLLVEILIAVLFA
TSLHFIMGPGGMHSFGHAAYFGLGAYGAALFLKVLNLPMEAALLLGPLLAVAGALVFGWF
CVRLSGVYLAMLTLAFAQIVWSVVFQWDDVTGGSNGILGLWPSNWLSSPVAFYYVTLVCA
VIGVWLLRKMLFSPLGYAMRASRDSVLRAEAIGIDVKRVQWAAFVIASLFCGLAGSLYAF
SKGTISPEVISVSRSVDGLVMVLLGGLQTLTGPIVGAAVFTWLQDTVARQTDYWQALLGF
AILLLVIAFPQGIVGFIRERFGDDSADSADKSAVSPSRRAAIKEGL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory