PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS21920 FitnessBrowser__BFirm:BPHYT_RS21920 (258 amino acids)

SeqID: BPHYT_RS21920 FitnessBrowser__BFirm:BPHYT_RS21920
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS21920 FitnessBrowser__BFirm:BPHYT_RS21920
MNTVTNLSEPIVSIRGLTKSFGSHTVLNGIDFDIQPQQVVVVIGPSGSGKSTFLRCCNGL
EQAEGGTIDICGHRLVDQGEMLKERSLNELRTEVGMVFQSFNLFPHLSVLHNITVGPRML
RGASKAEAEAAALALLEKVGLAHKAHVMPASLSGGQKQRVAIARALAMQPRVMLFDEPTS
ALDPELVGEVLQVMKLLASEGMTMVVVTHEMGFAKEVADVVVVMDGGVIVEAGPPAEIFS
APSQPRTRAFLQAVLSRA