PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS22050 FitnessBrowser__BFirm:BPHYT_RS22050 (538 amino acids)

SeqID: BPHYT_RS22050 FitnessBrowser__BFirm:BPHYT_RS22050
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 585619: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS22050 FitnessBrowser__BFirm:BPHYT_RS22050
MKTPFVYTTALAALVLTFAPSAFAVTVPPGVTLAASQEMTRQVPGETESLDPAHIESWTG
NTIGLDLFEGLTRMDASGAIVPGVAESWSRSGPNTWVFKLRHDARWSNGQPVTASDFVYS
WQRVLDPKTGSKYTVLVEFVKNAKAILAGKAPLSSLGVRAVDPYTLEVTTEVPATFFPQL
TAMATMTPVNRAVVTKFDGDWTRPGNFVGNGPYALTDWQPSNRLVATKSPTYWNNGKVVI
TKVTYLPIENDETAMRMYQAGQFDYTYSIPSGVYSQVSKQFGPELKTGLQIATYYYSLNN
DDPAFKDKRVRQALAMVLDRDLLTKRLTADGEVPMYGLIAKGTEGSGVFTPEWANWPMAK
RVDYARNLLKTAGYSDAKPLTFTLTYNTNDLHKKVALFATSEWRTKLGVTAKLENVEYKV
LLKQRHDGKVQASRDGWFVDYNDANSFFDLIRCNSVQNDQHYCNPQVDKLIDEGNQQLDD
AKRTALFTQAHDLAMNDYPVVSLFQYSADRLVKSYVGGYKPTNYLDMRATQDMYLTKH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory