PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS22475 FitnessBrowser__BFirm:BPHYT_RS22475 (1613 amino acids)

SeqID: BPHYT_RS22475 FitnessBrowser__BFirm:BPHYT_RS22475
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS22475 FitnessBrowser__BFirm:BPHYT_RS22475
MQAKNEEAVTHLLNDVVEFARGRLPEPTFKVVEPFLRHYYDFVDSDDLQSRSIADLYGAA
LAHWQTAQRFTPGAERLRVYNPILEQHGWHSDHTVIEIVNDDMPFLVDSVSMAVNRQGLA
LHSVVHPVFRIWRAPDGSIARVSQGAEEATDSRSHLTSFIHFEVDRCGDAAKLDALRDEI
AKVLRDVRAAVEDWPKIVELARVTIKGMKAGEGGPEGLEARAFLEWMVADHFTFLGQRDY
ELVQHDIGYGLRAVPGSGLGILRDALRPAGAAEITPLPPAAAEIISGSSPIFLTKANSRA
TVHRPGYLDYVGIKLTGADGKVTGERRFIGLYTSTAYFVSAAEIPIVRRKCANIVRRAGF
LPKGHLAKSLVTVLETYPRDELFQAEENQLYDIALGVLRLQEHQRTRLFIRRDRFDRFVS
CLVFVPRDKYNTDLRQRIANLLVDAFNGESVEFTPLLSESTLARIHFVVHAKPGGMPNVD
TRELEARLVQVARRWQDDLADALLDAFGEEQGNRLLQHYGDSFPAGYRDDYPARTAVRDI
ELIEHVQGSERLAMNLYRPIESGPRAFRFKVYRAGLPIALSRSLPMLEHLGVRVDEERPY
LIEALGATPAWIHDFGLELADDAEFDIERVKDLFEEAFEKVWTGAIESDDFNRLVLRAQL
NAREVTILRAYAKYLRQVGSTFSDAYIERAVTGNPAIARMLVELFIARFNPVLGETREAR
VDGWLHTIDSALDQVPNLDEDRILRQFLGVIKATKRTNYYRFDADGHPKPYLSFKFDPAQ
VPGLPEPKPMFEIWVYSPRVEGVHLRGGRVARGGLRWSDRREDFRTEVLGLMKAQMVKNV
VIVPVGSKGGFVVKNPPPQTERDAWMREGIACYQTFLRGLLDVTDNLAGTTIVPPPDVVR
HDPDDPYLVVAADKGTATFSDYANAISQEYGFWLDDAFASGGSVGYDHKKMAITARGAWE
SVKRHFREMGVDTQTMDFTVVGVGDMSGDVFGNGMLLSPHIKLVAAFDHRHIFLDPNPDP
AVSLAERGRLFILDRSSWADYDPSLISAGGGVFPRSAKTIPLSPAVQSVLGISAPALAPA
ELMRAILQAPVDLLYNGGIGTYVKASRESHLQVGDRANDAIRVNGSDLQCKVVAEGGNLG
LTQLGRIEFAQRGGRINTDAIDNSAGVDCSDHEVNIKILLGLVVSDGEMTEKQRNALLAE
MTDEVGLLVLQDNYYQTQALSIAGRYGVELLDAEARLMRYLERAGRLNRVIEFLPTDEEV
AERQAAKQGLTTPERAVLLAYSKMWLYDALLESPMPEDPLVSDMLVEYFPKPLRQRFSEP
MQRHPLRREILATHLTNALVNRVGCEFVHRLMEETDAQPGEIVRAIIMARDVFDLDDVWR
SIDALDNRVADDIQARMFVEVARLVERSALWFLRQLQSGAVSDRDVAGLLARCRDAAQRL
APQWPALLPGADLEALSERQRVFADAGVDSELAVRIAGGEISAALLDIAEVASTSGRSLE
LVAGVYFALGTLLNSSWISERAAALPVPTHWDMLARATAVADIARLKRALTTSALADADD
ASTPEALVEAWREKRTVQLERYAHLLADLRATGGASLSMLLVIVREMAALERA