PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS23140 FitnessBrowser__BFirm:BPHYT_RS23140 (324 amino acids)

SeqID: BPHYT_RS23140 FitnessBrowser__BFirm:BPHYT_RS23140
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 400831: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS23140 FitnessBrowser__BFirm:BPHYT_RS23140
MSNPTTSSPAALGAPSGSRLLGSLKKRLSMLVPSGRSTVIGVPFLWLTVFFALPFVLVLK
ISFADLRLGIPPYTDLVTVKDGMVHFAMQLSHYAFLLQDDLYVATYISSLKMAAVSTFFC
LLIGYPIAYYIARSEPTKRNLLMMGVMLPFWTSFLIRVYAWIGILKDDGLLNHTLMAIGM
IHSPLRLYHTDIGVYIGMVYSYLPFMVMPLYAHLVKMDLTLLEAAYDLGCKPWTAFTRIT
LPLSKNGIIAGSLLVFIPAVGEYVIPELLGGADTLMIGRVMWDEFFNDMDWPMASAVTVA
MVLLLLVPMAVFQYYQVKELEGAK