PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS23145 FitnessBrowser__BFirm:BPHYT_RS23145 (387 amino acids)

SeqID: BPHYT_RS23145 FitnessBrowser__BFirm:BPHYT_RS23145
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141512: Maltose/maltodextrin import ATP-binding protein malK]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS23145 FitnessBrowser__BFirm:BPHYT_RS23145
MNSTTSKSAAGATQMARPAVTTKSKSDEFVRIENVVKKFGDSTAVDNVNLSIAKNELFAL
LGSSGCGKSTLLRMLAGLETVTSGRIFVDGEDLAAMPPYKRPVNMMFQSYALFPHMSVEA
NIAFGLKQEGTPKNEIKERVADALNLVQMSKYAQRKPHQLSGGQQQRVALARSLVKRPKL
LLLDEPMSALDKKIRQKTQLELVNIIEKVDVTCVMVTHDQEEAMTMAGRLAVMSEGRIVQ
IGSPSQVYEFPNSRFSAEFIGSTNLFEGTVVADEPDHIFVESEELESRIYVSHGITGPLG
MPVGISVRPERIKVSLDKPTTPHNWARGVVADVAYMGSYSLYHVRLPSGKTVVSNLSSSH
LMAEGAPSYNDDVFVYWSPASGVVLTQ