PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS23435 FitnessBrowser__BFirm:BPHYT_RS23435 (469 amino acids)

SeqID: BPHYT_RS23435 FitnessBrowser__BFirm:BPHYT_RS23435
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2500934: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS23435 FitnessBrowser__BFirm:BPHYT_RS23435
METRVNPARPQATAPASTAMLRRVAFASTIGTAAEYYDFFVYGTAAVLVFGQKFFPSADP
LIGTLAAFATYAVGFLARPLGGIVFGHFGDRVGRKKALIVTILIVGLGTFAIGLLPDYQS
IGIWAPIALIVIRVLQGFGVGGEQAGAVLLTAEYAPPARRGFFASLVQLGAPAGFLIPSG
LFALLGATLTQAQLLDWGWRIPFLASALLVAVGLYIRLRTEESPIFATIQRTKAVASRPV
VEVVRQFGPTIVKGVGAKLIEACAFAMYTMIVLAYGKAHGIAQGMLLETVIVAVALELVT
IPLAGALSDRIGRRTTFIAGALLHVALVVPFFMAIDSGNRAAIQLVMILAISVGHSLCYA
PQAALFPELFPARVRCSGIALIWQIGSLLGSGVLGLLAVKLIQLTHGNSLALIVYVAVLG
IVSAVSLFALPETAPLRRGGDLHDWGGGEPVEARTAARASSSSSSLAQP