PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS24140 BPHYT_RS24140 2,5-dioxovalerate dehydrogenase (527 amino acids)

SeqID: BPHYT_RS24140 BPHYT_RS24140 2,5-dioxovalerate dehydrogenase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS24140 BPHYT_RS24140 2,5-dioxovalerate dehydrogenase
MTITGEMLIGRKAVRGEEKPLHAFNPATGSDIAEPVFGSGSVALVGQACELAQQAFDPYR
QLPLSVRAEFLERIADGITALGDALIERAHQESGLPKARLEGERGRTTGQLKLFAQVVRA
GQWLAATLDSPLPERKPLPRSDLRMRKIPLGPVAVFGASNFPLAFSVAGGDTAAALAAGC
PVVVKAHRAHLGTSEMVGRVIQRVAQEMDLPEGVFSMIVGAGNSVGEALVAHPAIKAVGF
TGSRAGGTSLMRVAAARAEPIPVYAEMSSINPVFLLSNALAARGESIARGFVDSLVLGAG
QFCTNPGLAIAVDSDALKTFVATASEALSGKPAQTMLTSGICAAYEEGEGKLAAIKGVEA
VARGVDTTGPTQARAALFVTDAQTFLATPALEDEVFGPASTIVRCKDEQELLAVAEYFDG
QLTATVQMDSADLASAKKLVPILERKAGRILVNGFPTGVEVSHAMVHGGPFPATSDSRAT
SVGTTSIERFLRPVCYQDFPADLLPEALADNNPLDLWRRRDGEITRS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory