PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS24470 FitnessBrowser__BFirm:BPHYT_RS24470 (350 amino acids)

SeqID: BPHYT_RS24470 FitnessBrowser__BFirm:BPHYT_RS24470
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 135560: L-threonine 3-dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS24470 FitnessBrowser__BFirm:BPHYT_RS24470
MSTTYAYAATDATAPLAPFEIQRRELRAHDVQMEVLFCGVCHSDLHQARNEWKNTVFPVV
PGHEIVGRVTAVGLDVTKYKAGDLVGVGCLVDSCRTCASCKEDLEQYCENGFVGTYNGVD
RVDGQTTYGGYSTQLVVDEAFTLRVPENLDPAGVAPLLCAGITTYSPLRTWGAGPGKKVG
IVGLGGLGHMGVKLARAMGAHVVLFTTSPSKIEDAKRLGAHEVVISKNAGEMEAHLNSFD
LIVNTVAAQHDLNPFLNLLKRDGTMTLVGAPEHDHPSPQVFNLIFKRRRLAGSLIGGIAE
TQEMLDFCGEHGITSDVEVIPMQGINEAFERMLKSDVKYRFVIDLDSLRK