PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS24635 FitnessBrowser__BFirm:BPHYT_RS24635 (750 amino acids)

SeqID: BPHYT_RS24635 FitnessBrowser__BFirm:BPHYT_RS24635
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS24635 FitnessBrowser__BFirm:BPHYT_RS24635
MSQGLLDSQNGTQASKAGARAAGGLSRRTFLKFGVTVGAAAGGGLLLGFSMPAASQDQKA
GKSVIGGDGVEAPQSGVFAPNAFIQIDTAGKVTLVIPKVEMGQGVYTSIPMLIAEELEVP
LDSITIDHAPPNEKLFMDPLLGGQLTGGSTSIRYAWEPMRKAGATARTVLISAAAQQWQV
DPASCHAQGGQVIHEASKRSVSYGELVTAAAGLPAPQNVKLKDPKDFKLIGTAVKRLDSP
EKVDGTAMFGLDVRVPDMVYAAIANCPVFGGTLASVDDTNAKKIPGVRQVIKIDNAVAVI
GDHTWAAKRGVQALVIKWNEGAGANLSMKQIVDDLANASQRDGAVARKDGDVGNAFSNAK
TRVDAVYQQPFLAHATMEPINCTVHVRPDGCDVWLGSQVPTRVVDAAAAVTGLPADKIVV
HNHLIGGGFGRRLEFDMVTQAVKVAKQVSTPVKVVWTREEDIQHDMYRPYYYDKISAGLD
ANGKPVAWQHRIVGSSVMARFAPPAFKNGIDPDAVEVAADLPYDLPNQLIDYVRQEPHTV
PTAFWRGVGPTRGTFVVESFIDELAAQAKVDPVKYRQDLLGKTPRALSVLNVATQAANWG
SAVPKGQGRGVSVMHAFGSFFAIVVDVAVEQGEVAVKRVVCAVDCGMVVNPNTIEAQVQG
GIIFGITAALYGEITIKDGRVEQNNFTDYRMLRIDQTPPIEVHIVKSSEAPGGIGEPGTA
ALAPALTNAIYAATGKRLRQLPVGSQLQTV