PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS24765 FitnessBrowser__BFirm:BPHYT_RS24765 (831 amino acids)

SeqID: BPHYT_RS24765 FitnessBrowser__BFirm:BPHYT_RS24765
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7388257: Sarcosine oxidase subunit alpha]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS24765 FitnessBrowser__BFirm:BPHYT_RS24765
MSTPLPTHARVVIVGGGIIGCSVAYHLTKLGWTDVVLLEQGQLSCGTTWHAAGLVGQLRA
QESMTKLIRYSTALYAELEADTGLATGWKQCGSLSVARTAERMTQLKRTAAVARAYGVAC
DVISPREAGDLWPVMRTDDLLGAVWLPGDGKANPTDLTQALARGARQRGARIVENTRVTA
IHTRTAQDGKANGAREVSGLAWRNKDGEEGTLGADIVVNCAGQWAKGVGRLCGVTVPLHS
AEHYYIVTERIAGVHPDLPVMRDPDGFIYFKEEVGGLVMGGFEPDAKPWGMNGIPENFEF
QLLPDDWDQFEILMKNALQRVPALETAQVKQFYNGPESFTPDNNFMLGEAPELRRFFVGA
GFNSMGIASAGGAGMALAEWIVAGEPTMDLWPVDIRRFARFNGNDTWLHDRVKETLGLHY
AMPWPNRELDSARPFRRSPLYSLLRDEGACFGSKMGWERANFFAPSPDEARIEYAFGQQN
WLPWSGAEHRACREGVALFDMTSFSKFLVKGRDAQSVLQGLVANDVDVPNGTTVYTAMLN
ERGGYESDFTLTRLADDQYLLVTGTAQTTRDFDSIEKSIPHDRHCTLVDVTGQYAVLAVM
GPRSRELLQSVSKADWSNEAFAFGQSRELDLGYATVRATRLTYVGELGWELYVPVEFAVG
VYETLHAAGKAFGLVNAGYYAIDSLRIEKGYRAWGRELTPDTNPFEAGLSFACKLDKDIA
FRGRDALLKLRAEPLRRRMVVLSANGATDRMLWGGEAILRDGKPVGFVSSAAFGHTLGCP
VAMGYVNNPDGAADAEYLNSGSYAIDVAGELLPATLHLKAPYDPRSERVKC