PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS25430 FitnessBrowser__BFirm:BPHYT_RS25430 (369 amino acids)

SeqID: BPHYT_RS25430 FitnessBrowser__BFirm:BPHYT_RS25430
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16128341: alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS25430 FitnessBrowser__BFirm:BPHYT_RS25430
MKSRAAVAFAPGKPLEIVEIDVEPPRKGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVL
GHEGAGIVVEVGEGVTSVKPGDHVIPLYTAECGECLFCKSGKTNLCVSVRATQGKGVMPD
GTSRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKIDPQANHEQVCLLGCGVTTGLGAVKN
TAKVQEGDTVAVFGLGGIGLAVIQGAKLATAGRIIAVDTNPGKFDLARAFGATDCVNPKD
HEKPIQQVIVDMTGWGVDHSFECIGSVNVMRAALECAHRGWGQSVVIGVAGAGQEISTRP
FQLVTGRRWLGTAFGGVKGRSQLPGMVEDAMEGKIQLAPFVTHTKPLSGINEAFDLMHEG
KSIRTVVHY